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January 22, 2008, at 12:42 AM by nali -
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PubH 8400 Advanced Statistical Genetics and Genomics - Spring 2007

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PubH 8400 Advanced Statistical Genetics and Genomics - Spring 2008

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January 22, 2008, at 12:41 AM by nali -
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  • Meeting Time & Place: PWB 6-210, T & Th 11:15AM - 12:30PM
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  • Meeting Time & Place: Moos T 2-116, T & Th 11:15AM - 12:30PM
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February 20, 2007, at 06:29 PM by nali -
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  • Homework 2 - Due on Mar 8.
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January 24, 2007, at 02:56 PM by nali -
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January 24, 2007, at 02:55 PM by nali -
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  • Some References Books in Statistical Genetics (summary taken from Amazon.com, comments are mine)
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  • Some textbooks in Statistical Genetics (summary taken from Amazon.com, comments are mine)

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January 24, 2007, at 02:54 PM by nali -
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  • Some References Books in Statistical Genetics
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  • Some References Books in Statistical Genetics (summary taken from Amazon.com, comments are mine)
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January 24, 2007, at 02:54 PM by nali -
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- Homework 1 - Due on Feb 6.

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  • Homework 1 - Due on Feb 6.
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- Encyclopedia of Genetics, Genomics, Proteomics and Bioinformatics (Access through UMN Library) - Some References Books in Statistical Genetics

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  • Encyclopedia of Genetics, Genomics, Proteomics and Bioinformatics (Access through UMN Library)
  • Some References Books in Statistical Genetics
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January 24, 2007, at 02:53 PM by nali -
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 - Encyclopedia of Genetics, Genomics, Proteomics and Bioinformatics (Access through UMN Library) 
 - Some References Books in Statistical Genetics

(The summary is from Amazon.com and the comments are mine, if there are any.)

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- Encyclopedia of Genetics, Genomics, Proteomics and Bioinformatics (Access through UMN Library) - Some References Books in Statistical Genetics

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January 24, 2007, at 02:53 PM by nali -
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 - Some References Books in Statistical Genetics  (The summary is from Amazon.com and the comments are mine, if there are any.)
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 - Some References Books in Statistical Genetics

(The summary is from Amazon.com and the comments are mine, if there are any.)

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January 24, 2007, at 02:53 PM by nali -
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 - Some References Books in Statistical Genetics
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 - Some References Books in Statistical Genetics  (The summary is from Amazon.com and the comments are mine, if there are any.)
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January 24, 2007, at 02:52 PM by nali -
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 - Some References Books in Statistical Genetics
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January 24, 2007, at 02:50 PM by nali -
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  1. Homework 1
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- Homework 1 - Due on Feb 6.

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January 23, 2007, at 01:45 PM by nali -
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  1. Homework 1
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January 16, 2007, at 03:16 PM by nali -
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  • Meeting Time & Place: T & Th 11:15AM - 12:30PM
  • Office Hours: TBA
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  • Meeting Time & Place: PWB 6-210, T & Th 11:15AM - 12:30PM
  • Office Hours: By appointment
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January 15, 2007, at 10:58 AM by nali -
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  1. Additional Part I (Statistical Genetics) Information
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January 15, 2007, at 10:42 AM by 71.210.159.63 -
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There will be about 6 homeworks and a final project, contributing 60% and 40% to the final grade respectively.

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November 21, 2006, at 02:10 PM by nali -
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 - Encyclopedia of Genetics, Genomics, Proteomics and Bioinformatics (Access through UMN Library)
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 - Encyclopedia of Genetics, Genomics, Proteomics and Bioinformatics (Access through UMN Library)
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November 03, 2006, at 12:50 PM by nali -
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November 03, 2006, at 12:47 PM by nali -
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 - Encyclopedia of Genetics, Genomics, Proteomics and Bioinformatics (Access through UMN Library)
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November 03, 2006, at 11:47 AM by nali -
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  • You can keep up with changes of the course website by subscribing to the

RSS feed

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  • You can keep up with changes of the course website by subscribing to the RSS feed (What is RSS?)
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November 03, 2006, at 11:46 AM by nali -
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  • You can keep up with changes of the course website by subscribing to the

RSS feed

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November 03, 2006, at 11:40 AM by nali -
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Resources

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Resources

Suggested Reading Material

Web Links

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November 03, 2006, at 11:39 AM by nali -
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1. Introduction; meiosis indicator, identity by descent and identity coefficients, likelihood.

2. Linkage analysis, LOD score, Elston-Stewart and Lander-Green algorithms, MCMC methods, nonparametric linkage.

3. Quantitative traits, variance component linkage methods.

4. Modern population genetics, coalescent theory and its applications (2 weeks).

5. Population based association studies, linkage disequilibrium, haplotype, population admixture. (2 weeks) 6. Family based association, TDT methods, design of family based studies. 7. Introduction to array technology: microarray, SNP array, mass spectrometry. 8. Low-level analysis: pre-processing of cDNA/Affy/SNP arrays (1.5 weeks). 9. High-level analysis I: differential gene expression detection and multiple comparison. 10. High-level analysis II: prediction, clustering, interaction modeling(2 weeks). 11. Analysis of mass spectrometry data.

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  1. Introduction; meiosis indicator, identity by descent and identity coefficients, likelihood.
  2. Linkage analysis, LOD score, Elston-Stewart and Lander-Green algorithms, MCMC methods, nonparametric linkage.
  3. Quantitative traits, variance component linkage methods.
  4. Modern population genetics, coalescent theory and its applications (2 weeks).
  5. Population based association studies, linkage disequilibrium, haplotype, population admixture. (2 weeks)
  6. Family based association, TDT methods, design of family based studies.
  7. Introduction to array technology: microarray, SNP array, mass spectrometry.
  8. Low-level analysis: pre-processing of cDNA/Affy/SNP arrays (1.5 weeks).
  9. High-level analysis I: differential gene expression detection and multiple comparison.
  10. High-level analysis II: prediction, clustering, interaction modeling(2 weeks).
  11. Analysis of mass spectrometry data.
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November 03, 2006, at 11:38 AM by nali -
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November 03, 2006, at 11:37 AM by nali -
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1. Introduction; meiosis indicator, identity by descent and identity 

   coefficients, likelihood.

2. Linkage analysis, LOD score, Elston-Stewart and Lander-Green 

   algorithms, MCMC methods, nonparametric linkage.
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1. Introduction; meiosis indicator, identity by descent and identity coefficients, likelihood. 2. Linkage analysis, LOD score, Elston-Stewart and Lander-Green algorithms, MCMC methods, nonparametric linkage.

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4. Modern population genetics, coalescent theory and its applications (2 

   weeks).

5. Population based association studies, linkage disequilibrium, 

   haplotype, population admixture. (2 weeks)
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4. Modern population genetics, coalescent theory and its applications (2 weeks). 5. Population based association studies, linkage disequilibrium, haplotype, population admixture. (2 weeks)

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7. Introduction to array technology: microarray, SNP array, mass 

   spectrometry.

8. Low-level analysis: pre-processing of cDNA/Affy/SNP arrays (1.5 

    weeks).

9. High-level analysis I: differential gene expression detection and 

   multiple comparison.

10. High-level analysis II: prediction, clustering, interaction modeling 

   (2 weeks).
to:

7. Introduction to array technology: microarray, SNP array, mass spectrometry. 8. Low-level analysis: pre-processing of cDNA/Affy/SNP arrays (1.5 weeks). 9. High-level analysis I: differential gene expression detection and multiple comparison. 10. High-level analysis II: prediction, clustering, interaction modeling(2 weeks).

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November 03, 2006, at 11:37 AM by nali -
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Notes

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Course Outline and Notes

1. Introduction; meiosis indicator, identity by descent and identity 

   coefficients, likelihood.

2. Linkage analysis, LOD score, Elston-Stewart and Lander-Green 

   algorithms, MCMC methods, nonparametric linkage.

3. Quantitative traits, variance component linkage methods. 4. Modern population genetics, coalescent theory and its applications (2 

   weeks).

5. Population based association studies, linkage disequilibrium, 

   haplotype, population admixture. (2 weeks)

6. Family based association, TDT methods, design of family based studies. 7. Introduction to array technology: microarray, SNP array, mass 

   spectrometry.

8. Low-level analysis: pre-processing of cDNA/Affy/SNP arrays (1.5 

    weeks).

9. High-level analysis I: differential gene expression detection and 

   multiple comparison.

10. High-level analysis II: prediction, clustering, interaction modeling 

   (2 weeks).

11. Analysis of mass spectrometry data.

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October 30, 2006, at 11:35 AM by nali -
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  • Meeting Time & Place: TBD
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  • Meeting Time & Place: T & Th 11:15AM - 12:30PM
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October 30, 2006, at 11:32 AM by nali -
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title Statistical Genetics and Genomics II

PubH 8400 Statistical Genetics and Genomics II - Spring 2007

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(:title Advanced Statistical Genetics and Genomics:)

PubH 8400 Advanced Statistical Genetics and Genomics - Spring 2007

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October 26, 2006, at 08:34 AM by nali -
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October 25, 2006, at 06:05 PM by nali -
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  • [(Attach:)Syllabus.pdf]
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October 25, 2006, at 06:05 PM by nali -
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  • [(Attach:)Syllabus.pdf]
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October 25, 2006, at 06:03 PM by nali -
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October 25, 2006, at 06:02 PM by nali -
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  • [Attach:statgen2-syllabus.pdf | Syllabus]
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October 25, 2006, at 06:02 PM by nali -
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  • Meeting Time & Place: TBD
  • Office Hours: TBA
  • [Attach:statgen2-syllabus.pdf | Syllabus]
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October 25, 2006, at 06:00 PM by nali -
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 * Instructors: Na Li (nali@umn.edu) and Baolin Wu (baolin@umn.edu)
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  • Instructors: Na Li (nali@umn.edu) and Baolin Wu (baolin@umn.edu)
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October 25, 2006, at 06:00 PM by nali -
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 - Instructors: Na Li (nali@umn.edu) and Baolin Wu (baolin@umn.edu)
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 * Instructors: Na Li (nali@umn.edu) and Baolin Wu (baolin@umn.edu)
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October 25, 2006, at 05:59 PM by nali -
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 - Instructors: Na Li (nali@umn.edu) and Baolin Wu (baolin@umn.edu)
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October 25, 2006, at 05:57 PM by nali -
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PubH 8400 Statistical Genetics and Genomics II - Spring 2007

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PubH 8400 Statistical Genetics and Genomics II - Spring 2007

Information

Notes

Homework and Projects

Resources

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October 24, 2006, at 02:09 PM by nali -
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title Statistical Genetics and Genomics II

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(:title Statistical Genetics and Genomics II:)

PubH 8400 Statistical Genetics and Genomics II - Spring 2007

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October 24, 2006, at 02:08 PM by nali -
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(:title Statistical Genetics and Genomics II:)

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