Cavan S. Reilly

Cavan Reilly

Associate Professor

Division of Biostatistics

I received a Ph.D. (2000) and an M.S. (1997) from the Department of Statistics at Columbia University, an M.A. in Economics at the New School for Social Research (1995) and a B.S. (1993) in Sociology from the University of Minnesota, Twin Cities. My statistical research interests are time series analysis, spatial statistics and statistical genetics/genomics. Most of my applied work is in the area of HIV/AIDS. For full CV: ps

Courses

PubH 5450-Biostatistics I (Fall 2002)
PubH 7445/8445-Statistics for Human Genetics and Molecular Biology. (Fall 2007)
PubH 8422-Modern Nonparametrics. (Fall 2003)
PubH 8442-Bayes Decision Theory and Data Analysis. (Spring 2008)

Software

1 dimensional morphing software C code
2 dimensional morphing software C code
Some Bayesian microarray normalization software C code and info
max Kappa statistic info C code
nonparametric analysis of microarray time course experiments C code
Software for Bayesian inference with the Metropolis algorithm info C code e.g. file e.g. file e.g. file e.g. file
neighbor density variogram estimation in R info C code
Semiparametric association tests for QTLs in structured populations in C++ C++ code C++ header file

Supplementary Online Resources

Appendices for Determination of SIV production by infected activated and resting cells pdf
data set for the analysis of virus production (first column is activated cells, second is resting) txt
software for analysis of virus production C code
posterior modes and initial values for analysis of virus production txt

Selected research papers

Reilly, C., Gelman, A. and J. Katz (2001), "Post-stratification without population level information on the post-stratifying variable, with application to political polling", Journal of the American Statistical Association, 96, 1-11. ps
Raghavan, A., Ogilvie, R., Reilly, C., Abelson, M., Raghavan, S., Vasdewani, J., Krathwohl, M. and Bohjanen, P. (2002), "Genome-wide analysis of mRNA decay in resting and activated primary human T lymphocytes", Nucleic Acids Research, 30, 5529-5538. pdf
Reilly, C., Schacker, T., Haase, A., Wietgrefe, S. and Krason, D. (2002), "The clustering of infected SIV cells in lymphatic tissue", Journal of the American Statistical Association, 97, 943-954. pdf
Reilly, C., Wang, C., and Rutherford, M. (2003), "A method for normalizing microarrays using the genes that are not differentially expressed", Journal of the American Statistical Association, 98, 868-878. pdf
Zhang, Z. Q., Wietgrefe, S., Li, Q., Shore, M., Lljie, D., Reilly, C., Lifson, J., Haase, A. (2004), "Roles of Target Cell Availability, Susceptibility and Productive Infection of Resting and Activated CD4+ T Cells in Transmission and Acute SIV Infection", Proceedings of the National Academy of the Sciences, USA, 101, 5640-5645.
Reilly, C., Price, P., Gelman, A., Sandgrathe, S. (2004), "Using image and curve registration for measuring the goodness of fit of spatial and temporal predictions", Biometrics , 60, 954-964. ps
Reilly, C. (2005), "A nonparametric approach to the analysis of longitudinal data via a set of level crossing problems with application to the analysis of microarray time course experiments" Biostatistics , 6, 271-278. html/pdf
Li Q, Duan, L, Estes, J, Ma Z-M, Rourke T, Wang Y, Reilly C, Carlis J, Miller C, Haase A (2005), "Peak SIV replication in resting memory CD4+ T cells depletes gut lamina propria CD4+ T cells", Nature, 434, 1148-1152. html
Hataye J, Moon JJ, Khoruts A, Reilly C, Jenkins MK (2006), "Naive and memory CD4+ T cell survival controlled by clonal abundance", Science, 312, 114-116.
Reilly C, Wietgrefe S, Sedgewick G, Haase A (2007), "Determination of simian immunodeficiency virus production by infected activated and resting cells", AIDS, 21, 163-168.
Larsson O, Perlman DM, Fan D, Reilly C, Peterson M, Dahlgren C, Liang Z, Li S, Polunovsky VA, Wahlestedt C, Bitterman P (2007), ``Apoptosis resistance downstream of eIF4E: posttranscriptional activation of an anti-apoptotic transcript carrying a consensus hairpin structure'', Nucleic Acids Research , 34, 4375-4392.
Reilly C, Miller MB, Liu Y, Oetting WS, King R, Blumenthal M (2007), ``Linkage analysis of a cluster-based quantitative phenotype constructed from pulmonary function test data in 27 multigenerational families with multiple asthmatic members'', Human Heredity , 64, 136-145.
Reilly, C., Gelman, A., (2007), "Weighted variogram estimation for data with clustering", Technometrics , 49, 184-195.
Cavan Reilly
email: cavanr@biostat.umn.edu
phone: 612.624.9644; fax: 612.626.0660
postal address:
School of Public Health
A460 Mayo Building, MMC 303
420 Delaware Street S.E.
Minneapolis MN 55455