| Dates | Topics | Notes | Rcode | Reading | Homework |
|---|---|---|---|---|---|
| Sep 09 2015 | Review of Molecular Biology |
Lecture 1 | SimpleR section 1-3
|
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| Sep 11 2015 | Introduction to Population Genetics and Introduction to R |
Lecture2 | Lab2.R | SimpleR section 6, Appendix (page 135-139) |
Homework1 |
| Sep 14 2015 | Introduction to R |
Lecture3 | Lab3.R | SimpleR Section 4, 12 |
|
| Sep 16 2015 | Review of Statistics: Continuous Data Introduction to R |
Lecture4 | Lab4.R | SimpleR Section 5,7,10,11 |
|
| Sep 18 2015 | Review of Statistics: Categorial Data Introduction to R |
Lecuture5 | Lab5.R | SimpleR Section 8, 13, 14, 15 |
Homework2 |
| Sep 21 2015 | Linear Regression Introduction to R |
Lecture5 | Lab6.R | SimpleR |
|
| Oct 28 2015 | Introduction to Microarray Technology | Lecture23 | Case Studies Chapter 1-3 |
||
| Oct 30 2015 | Introduction to Microarray Technology (Cont.) |
Case Studies Chapter 1-3 |
|||
| Nov 02 2015 |
Preprocessing Microarray Data |
Lecture24 |
Lab18 |
Case Studies Chapter 1-3 |
|
| Nov 04 2015 |
Preprocessing Microarry Data (Cont) |
Lecture25 |
Lab19 |
Case Studies Chapter 1-3 |
Homework7 |
| Nov 06 2015 |
Preprocessing Two Color Data |
Lecture26 |
Lab20 |
Case Studies Chap4-5 |
|
| Nov 09 2015 |
Differential Expression Analysis with limma & SAM | Lecture27 | Lab20 |
||
| Nov 11 2015 |
Two-Color Data |
Lecture28 |
Lab21 |
Homework8 Taqman Data |
|
| Nov 13 2015 |
Annotation and Enrichment Analysis |
Lecture29 |
Lab22 |
||
| Nov 16 2015 |
Annotation and Enrichment Analysis | Lecture30 | Lab23 |
||
| Dec 04 2015 |
Supervised Machine Learning |
Lecture37 |
Lab24 |
Homework9 |
|
| Dec 07 2015 |
Unsupervised Machine Learning |
Lecture38 |
Lab25 |
||
| Dec 09-11 2015 | R tools for pathway analysis using RNA-Seq data | Lecture39 | Lab26 |